Predicted protein-protein interaction sites from local sequence information
نویسندگان
چکیده
منابع مشابه
Predicted protein-protein interaction sites from local sequence information.
Protein-protein interactions are facilitated by a myriad of residue-residue contacts on the interacting proteins. Identifying the site of interaction in the protein is a key for deciphering its functional mechanisms, and is crucial for drug development. Many studies indicate that the compositions of contacting residues are unique. Here, we describe a neural network that identifies protein-prote...
متن کاملRunning Title: Protein-Protein Interaction Sites Predicting Protein-Protein Interaction Sites From Amino Acid Sequence
We describe an approach for computational prediction of protein-protein interaction sites using a support vector machine (SVM) classifier. Interface residues and other surface residues were extracted from 115 proteins derived from a set of 70 heterocomplexes in PDB. The SVM classifier was trained to predict whether or not a surface residue is located in the interface based on the identity of th...
متن کاملfRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information
As the sequence identity between a pair of proteins decreases, alignment strategies that are based on sequence and/or sequence profiles become progressively less effective in identifying the correct structural correspondence between residue pairs. This significantly reduces the ability of comparative modeling-based approaches to build accurate structural models. Incorporating predicted informat...
متن کاملPredicting Protein-Protein Interaction Sites From Amino Acid Sequence
We describe an approach for computational prediction of protein-protein interaction sites using a support vector machine (SVM) classifier. Interface residues and other surface residues were extracted from 115 proteins derived from a set of 70 heterocomplexes in PDB. The SVM classifier was trained to predict whether or not a surface residue is located in the interface based on the identity of th...
متن کاملDiscovering Protein-Protein Interaction Sites from Sequence and Structure
This chapter gives a comprehensive introduction of the sequence/structural features that are characteristic of protein-protein interaction sites and reviews state-of-the-art methodologies for protein-protein binding site prediction. Protein-protein interaction residues are largely responsible for mediating physical binding processes such as inhibitory effects through enzyme-inhibitor interactio...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: FEBS Letters
سال: 2003
ISSN: 0014-5793
DOI: 10.1016/s0014-5793(03)00456-3